Research output

@article{dogan2026pvtedof,
  author = {Doğan, Ramazan Özgür and Doğan, Hülya and Yilmaz, Alper and Sezen, Feride Sena},
  title = {An effective pyramid vision transformer-based extended depth of focus technique for optimally focused microscopic imaging},
  journal = {The Journal of Supercomputing},
  volume = {82},
  number = {12},
  pages = {634},
  year = {2026},
  doi = {10.1007/s11227-026-08761-6}
}

@article{dogan2026fromhand,
  author = {Dogan, Ramazan Ozgur and Dogan, Hulya and Çal, Semih},
  title = {From Handcrafted Focus Measurement Operators to Deep Learning: A Comprehensive Review of Shape from Focus Strategies},
  journal = {Archives of Computational Methods in Engineering},
  year = {2026},
  doi = {10.1007/s11831-026-10547-1}
}

@inproceedings{akturk2026neuro,
  author = {Aktürk, B. and Doğan, Ramazan Özgür and Uzun, Ümit and Sezen, Feride Sena and Doğan, Hülya},
  title = {A Novel Neuro-Focus Fusion Framework for Fully Focused Microscopic Imaging},
  booktitle = {The 12th International Conference on Computer Technology Applications (ICCTA 2026)},
  address = {Vienna, Austria},
  year = {2026}
}

@inproceedings{emir2026vggunet,
  author = {Emir, Sümeyye Nur and Doğan, Ramazan Özgür and Doğan, Hülya and Ay, İlyas},
  title = {Creation of a Novel Dataset and VGG-UNet Based Deep Learning Approach for Automated Blood Cell Segmentation},
  booktitle = {11th International Health Sciences and Management Congress (IHMC 2026)},
  address = {Konya, Türkiye},
  year = {2026}
}

@inproceedings{dogu2026moa,
  author = {Doğu, Fatma Tuana and Doğan, Ramazan Özgür and Doğan, Hülya and Ay, İlyas and Kalha, Z. and Kaya Yaşar, Y. and others},
  title = {Mechanism of Action of Pharmacological Agents: A New Deep Learning-based Prediction Model Using Smooth Muscle Contractility Signals},
  booktitle = {The 12th International Conference on Computer Technology Applications (ICCTA 2026)},
  address = {Vienna, Austria},
  year = {2026}
}

@article{dogan2025swin,
  author = {Dogan, Ramazan Ozgur and Dogan, Hulya and Yilmaz, Alper},
  title = {Swin transformer-based shape-from-focus technique for accurate 3D shape estimation},
  journal = {Optics and Lasers in Engineering},
  volume = {193},
  pages = {109108},
  year = {2025},
  doi = {https://doi.org/10.1016/j.optlaseng.2025.109108}
}

@article{danismaz2025two,
  author = {Danismaz, Sibel and Dogan, Ramazan Ozgur and Dogan, Hulya},
  title = {Two-phase deep learning method for image fusion-based extended depth of focus},
  journal = {The Journal of Supercomputing},
  volume = {81},
  number = {14},
  pages = {1298},
  year = {2025}
}

@inproceedings{dogan2025smartmm,
  author = {Doğan, Ramazan Özgür and Doğu, Fatma Tuana and Santos De Oliveira, N. and Kannada, I. and Doğan, Hülya and Sezen, Feride Sena},
  title = {Deep Learning-Based Image Fusion with Novel Multi-Focus Dataset for Extended Depth of Focus in Microscopy},
  booktitle = {International Conference on Smart Multimedia},
  pages = {1--7},
  address = {Paris, France},
  year = {2025}
}

@inproceedings{cal2025enhanced,
  author = {Çal, Semih and Dogan, Ramazan Ozgur and Dogan, Hulya},
  title = {Enhanced Multi-Head Self-Attention Transformer-Based Method for Prediction of Drug-Drug Interactions},
  booktitle = {2025 13th International Symposium on Digital Forensics and Security (ISDFS)},
  pages = {1--6},
  year = {2025}
}

@article{dogan2024higher,
  author = {Doğan, Hülya},
  title = {A higher performance shape from focus strategy based on unsupervised deep learning for 3D shape reconstruction},
  journal = {Multimedia Tools and Applications},
  volume = {83},
  number = {12},
  pages = {35825--35848},
  year = {2024},
  doi = {10.1007/s11042-023-16721-y}
}

@article{dogan2024dl,
  author = {Dogan, Hulya and Dogan, Ramazan Ozgur and Ay, Ilyas and Sezen, Feride Sena},
  title = {DL-EDOF: Novel Multi-Focus Image Data Set and Deep Learning-Based Approach for More Accurate and Specimen-Free Extended Depth of Focus},
  journal = {Journal of Imaging Informatics in Medicine},
  volume = {37},
  number = {4},
  pages = {1991--2013},
  year = {2024}
}

@article{dougu2024kan,
  author = {Doğu, Fatma Tuana and Danaei, Zeinab and Doğan, Hülya and Doğan, Ramazan Özgür and Sezen, Feride Sena},
  title = {Kan Hücrelerinin Optimum Odaklı Görüntülenmesi için Derin Öğrenme Tabanlı Yaklaşımın Geliştirilmesi},
  journal = {Kahramanmaraş Sütçü İmam Üniversitesi Mühendislik Bilimleri Dergisi},
  volume = {27},
  number = {4},
  pages = {1465--1476},
  year = {2024}
}

@inproceedings{dougu2024extracting,
  author = {Doğu, Fatma Tuana and Doğan, Hülya and Doğan, Ramazan Özgür and Ay, İlyas and Sezen, F Sena},
  title = {Extracting 3D Structure of Blood Cells Using Shape From Focus Strategies},
  booktitle = {2024 Innovations in Intelligent Systems and Applications Conference (ASYU)},
  pages = {1--6},
  year = {2024}
}

@inproceedings{dogu2024performance,
  author = {Dogu, Fatma Tuana and Dogan, Hulya and Dogan, Ramazan Ozgur and Sezen, F Sena},
  title = {Performance Improvement in Blood Cell Segmentation with Deep Learning-based Image Fusion Approach},
  booktitle = {2024 8th International Artificial Intelligence and Data Processing Symposium (IDAP)},
  pages = {1--5},
  year = {2024}
}

@article{dougan20233b,
  author = {Doğan, Hülya and Doğan, Ramazan Özgür},
  title = {A New High Quality Focus Measurement Operator Based on Nonsubsampled Shearlet Transform for 3D Shape Reconstruction},
  journal = {Mühendislik Bilimleri ve Araştırmaları Dergisi},
  volume = {5},
  number = {1},
  pages = {9--19},
  year = {2023}
}

@article{emir2023floresan,
  author = {Emir, Sümeyye Nur and Danışmaz, Sibel and Doğan, Hülya and Doğan, Ramazan Özgür},
  title = {Floresan Mikroskop Sistemlerinde Yüksek Doğruluklu Nükleer Segmentasyonu için Otomatik Kodlayıcı Tabanlı Modellerin Geliştirilmesi},
  journal = {Karadeniz Fen Bilimleri Dergisi},
  volume = {13},
  number = {3},
  pages = {801--813},
  year = {2023}
}

@article{danicsmaz2023odaklama,
  author = {Danışmaz, Sibel and Emir, Sümeyye Nur and Doğan, Hülya and Doğan, Ramazan Özgür},
  title = {Investigation of Effects of Deep Features on Focus Values Extraction in Extended Depth of Focus},
  journal = {Eskişehir Osmangazi Üniversitesi Mühendislik ve Mimarlık Fakültesi Dergisi},
  volume = {31},
  number = {3},
  pages = {917--930},
  year = {2023}
}

@article{dougan2023ilacc,
  author = {Doğan, Ramazan Özgür and Doğan, Hülya and Sezen, Feride Sena},
  title = {İlaç-İlaç Etkileşimi Tahmini için Konvolüsyonel Sinir Ağı Tabanlı Yeni Bir Yaklaşım},
  journal = {Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi},
  volume = {27},
  number = {1},
  pages = {137--144},
  year = {2023}
}

@inproceedings{dogu2023efficient,
  author = {Dogu, Fatma Tuana and Dogan, Hulya and Dogan, Ramazan Ozgur and Ay, Ilyas and Sezen, Feride Sena},
  title = {An Efficient Technique Based on Deep Learning for Automatic Focusing in Microscopic System},
  booktitle = {International Congress of Electrical and Computer Engineering},
  pages = {233--248},
  year = {2023}
}

@inproceedings{sevim2023extensive,
  author = {Sevim, Zeynep and Dogan, Hulya and Demir Öksüz, Zeynep and Sezen, Feride Sena and Dogan, Ramazan Ozgur},
  title = {An Extensive Study: Creation of A New Inverted Microscope Image Data Set and Improving Auto-Encoder Models for Higher Accuracy Segmentation of HaCaT Cell Culture Line},
  booktitle = {2023 5th International Congress on Human-Computer Interaction, Optimization and Robotic Applications (HORA)},
  pages = {1--6},
  year = {2023}
}

@inproceedings{dougan2023deep,
  author = {Doğan, Hülya and Doğan, Ramazan Özgür},
  title = {Mikroskobik Sistemlerde 3B Görüntüleme için Derin Öğrenme Tabanlı Odaklama Ölçüm Operatörü},
  booktitle = {2023 31st Signal Processing and Communications Applications Conference (SIU)},
  pages = {1--4},
  year = {2023}
}